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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clcn5, chloride channel 5
Sequence ID:NM_001243762
NM_016691
Entrez Gene ID:12728
Ensembl ID:ENSMUSG00000004317

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X A1.1|X 0.8 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 7159545 - 7188714


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3989812Full LengthBC036347chloride channel 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057900  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001243762 NP_001230691    
NM_016691 NP_057900 Q9WVD4
Q8CI67
CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
AF134117 AAD28473 Q9WVD4
BC036347 AAH36347 Q8CI67
AK052990 BAC35233 Q8C6W8
AK145763 BAE26635 Q3UL16

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clcn5 NP_057900 R.norvegicus Clcn5 25749   NP_058802 99
H.sapiens CLCN5 1184 Gene Info NP_001121370 98
N.crassa NCU06624 3878514   XP_962366 42
S.cerevisiae GEF1 853497   NP_012574 37
S.pombe SPBC19C7.11 2540750   NP_596167 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)