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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cd40lg, CD40 ligand
Sequence ID:NM_011616
Entrez Gene ID:21947
Ensembl ID:ENSMUSG00000031132

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X A5|X 18.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 57212095 - 57223679

NM_011616 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11685446531954465486
1693005446714154467272
3013555447090054470954
3564185447291454472976
41912505447638754477218

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8733974Full LengthBC119225CD40 ligand

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035746  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011616 NP_035746 P27548 TNF

Related Sequences

 
mRNAGenPeptSwissProt
BC119225 AAI19226 Q0VEI3
P27548
EU274582 ABX76043 Q0VEI3
X65453 CAA46448 P27548

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cd40lg NP_035746 R.norvegicus Cd40lg 84349   NP_445805 94
H.sapiens CD40LG 959 Gene Info NP_000065 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta