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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lamp2, lysosomal-associated membrane protein 2
Sequence ID:NM_001017959
NM_010685
Entrez Gene ID:16784
Ensembl ID:ENSMUSG00000016534

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:X A3.3|X 13.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 38421118 - 38456420

 Exon Info From UCSC:
NM_001017959
NM_010685

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861740Full LengthBC138718lysosomal-associated membrane protein 2
8861745Full LengthBC138723lysosomal-associated membrane protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001017959  NP_034815  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017959 NP_001017959 P17047 Lamp
NM_010685 NP_034815   Lamp

Related Sequences

 
mRNAGenPeptSwissProt
J05287 AAA39412 P17047
M32017 AAA39429 P17047
BC138718 AAI38719 P17047
BC138723 AAI38724 P17047
AK012149 BAB28062 Q9CZU7
AK032974 BAC28106 P17047
AK048174 BAC33265 Q8C876
AK078193 BAC37169 Q8C5K0
AK146731 BAE27393 Q3UIW3
AK159272 BAE34951 P17047
AK159731 BAE35325 Q3TWE1
AK163933 BAE37543 P17047

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lamp2 NP_034815 R.norvegicus Lamp2 24944   NP_058764 78
H.sapiens LAMP2 3920 Gene Info NP_001116078 63

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)