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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nphp1, nephronophthisis 1 (juvenile) homolog (human)
Sequence ID:NM_016902
Entrez Gene ID:53885
Ensembl ID:ENSMUSG00000027378

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 F3

Chromosomal Position (from UCSC)

Chromosomal Position:2: 127740733 - 127788854

 Exon Info From UCSC:
NM_016902

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40093235Full LengthBC118953nephronophthisis 1 (juvenile) homolog (human)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058598  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016902 NP_058598   SH3_1
SH3_2

Related Sequences

 
mRNAGenPeptSwissProt
AF176210 AAD54311 Q9QY53
AF127180 AAF22134 Q9QY53
BC118953 AAI18954 Q0VF70
EF174553 ABM47411 A1Z2X7
EF174554 ABM47412 A1Z2X8
FJ767895 ACN86281 C0LT62
FJ767896 ACN86282 C0LT63
FJ767897 ACN86283 C0LT64
FJ767898 ACN86284 C0LT64
AK159627 BAE35241 Q3TWM5
AJ243223 CAB45687 Q9QY53

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nphp1 NP_058598 R.norvegicus Nphp1 296136   NP_001099976 98
H.sapiens NPHP1 4867 Gene Info NP_000263 77
C.elegans nph-1 174643   NP_496298 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)