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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rdh1, retinol dehydrogenase 1 (all trans)
Sequence ID:NM_080436
Entrez Gene ID:107605
Ensembl ID:ENSMUSG00000089789

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D3|10 70.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 127759720 - 127766921

NM_080436 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1488127196818127197305
489747127200020127200278
748911127201737127201900
9123890127202376127205354

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860949Full LengthBC137930retinol dehydrogenase 1 (all trans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_536684  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080436 NP_536684 Q8VIJ7 adh_short

Related Sequences

 
mRNAGenPeptSwissProt
BC137930 AAI37931 Q8CGV4
AY028928 AAK30001 Q8VIJ7
AK136574 BAE23056 Q8CGV4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rdh1 NP_536684 M.musculus Rdh16 19683 Gene Info NP_033066 91
M.musculus Rdh9 103142 Gene Info NP_694773 89
M.musculus Rdh19 216453 Gene Info NP_671755 89
M.musculus BC089597 216454 Gene Info NP_663399 86
R.norvegicus Rdh2 299511   NP_954678 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)