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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scg5, secretogranin V
Sequence ID:NM_009162
Entrez Gene ID:20394
Ensembl ID:ENSMUSG00000023236

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E5|2 64.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 113776365 - 113829029

NM_009162 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1584113616469113617052
585638113620790113620843
639751113628892113629004
752901113632036113632185
9021134113667495113667727
11351227113669155113669247

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5361810Full LengthBC029021secretogranin V

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033188  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009162 NP_033188 P12961 Secretogranin_V

Related Sequences

 
mRNAGenPeptSwissProt
BC029021 AAH29021 Q3TT51
P12961
AK005331 BAB23956 P12961
AK011938 BAB27927 Q3TT51
P12961
AK017481 BAB30765 P12961
AK019337 BAB31669 P12961
AK031856 BAC27581 P12961
AK161556 BAE36461 Q3TT51
P12961
AK161579 BAE36474 Q3TT51
P12961
X15830 CAA33835 Q3TT51
P12961

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scg5 NP_033188 R.norvegicus Scg5 25719   NP_037307 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)