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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Htr5a, 5-hydroxytryptamine (serotonin) receptor 5A
Sequence ID:NM_008314
Entrez Gene ID:15563
Ensembl ID:ENSMUSG00000039106

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 A3-B|5 15.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 27843072 - 27855086

NM_008314 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
112432816848628169728
124455762817729328181625

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40104765Full LengthBC1159115-hydroxytryptamine (serotonin) receptor 5A
40104769Full LengthBC1166545-hydroxytryptamine (serotonin) receptor 5A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032340  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008314 NP_032340 P30966 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
BC115911 AAI15912 P30966
BC116654 AAI16655 P30966
AK137323 BAE23305 Q3UVG4
AK141636 BAE24778 P30966
AK162885 BAE37099 Q3TRD1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Htr5a NP_032340 R.norvegicus Htr5a 25689   NP_037280 96
H.sapiens HTR5A 3361 Gene Info NP_076917 88
C.elegans tyra-2 180970   NP_001033537 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)