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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col6a6, collagen, type VI, alpha 6
Sequence ID:NM_001102607
NM_172927
Entrez Gene ID:245026
Ensembl ID:ENSMUSG00000043719

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F1|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 105774111 - 105809648

 Exon Info From UCSC:
NM_001102607
NM_172927

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9087606Full LengthBC150695RIKEN cDNA E330026B02 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766515  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001102607 NP_001096077 Q8C6K9  
NM_172927 NP_766515 Q8C6K9 VWA

Related Sequences

 
mRNAGenPeptSwissProt
BC150695 AAI50696 B9EK79
AK054356 BAC35749 Q8C6K9
AM748259 CAO01894 Q8C6K9
AM748260 CAO01895 Q8C6K9
AM748261 CAO01896 Q8C6K9
AM748262 CAO01897 Q8C6K9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col6a6 NP_001096077 R.norvegicus Col6a6 315979   XP_236593 93
H.sapiens COL6A6 131873 Gene Info NP_001096078 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)