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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. C1galt1, core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
Sequence ID:NM_052993
Entrez Gene ID:94192
Ensembl ID:ENSMUSG00000042460

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, colon, embryonic tissue, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pooled tissue, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 A1|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 7874269 - 7875680

NM_052993 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
117177952237795393
17240878139047814140
409107678163757817042
1077206478210537822040

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30077842Full LengthBC064767core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1
5040878IncompleteBC025899core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_052993 NP_443719 Q9JJ06 EC 2.4.1.122  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF157962 AAF81982 Q9JJ06 EC 2.4.1.122
BC025899 AAH25899 Q9JJ06 EC 2.4.1.122
BC064767 AAH64767 Q9JJ06 EC 2.4.1.122

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus C1galt1 NP_443719 R.norvegicus C1galt1 65044   NP_075239 94
H.sapiens C1GALT1 56913 Gene Info NP_064541 89
A.gambiae AgaP_AGAP009979 1279400   XP_319116 53
D.melanogaster C1GalTA 34215   NP_609258 51
C.elegans C38H2.2 176455   NP_499293 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)