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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lrrd1, leucine rich repeats and death domain containing 1
Sequence ID:NM_172879
Entrez Gene ID:242838
Ensembl ID:ENSMUSG00000040367

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 A1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 3845172 - 3866594

NM_172879 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
127438451723845445
275223838496313851594
2239243738586283858826
2438259938638293863990
2600271738656643865781
2718295138663623866595

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9053721Full LengthBC145170RIKEN cDNA 4932412H11 gene
9055638Full LengthBC141026RIKEN cDNA 4932412H11 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_766467  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001170552 NP_001164023    
NM_030675 NP_109600 Q6S5J6 Ank
NM_172879 NP_766467 Q8C0R9 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
AF306509 AAG18456 Q6S5J6
AF310134 AAG47775 Q6S5J6
BC054819 AAH54819 Q6S5J6
BC085252 AAH85252 Q5U463
BC141026 AAI41027 Q8C0R9
BC141042 AAI41043 B2RUA8
BC145170 AAI45171 Q8C0R9
AY328895 AAQ92980 Q6S5J6
AY464945 AAR24089 Q6S5J6
AK029981 BAC26715 Q8C0R9
AK041574 BAC30991 Q6S5J6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 4932412H11Rik NP_766467 R.norvegicus Lrrd1 296836   XP_216085 84
H.sapiens LRRD1 401387 Gene Info NP_001155000 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)