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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vimp, VCP-interacting membrane protein
Sequence ID:NM_024439
Entrez Gene ID:109815
Ensembl ID:ENSMUSG00000075701

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 C|7 28.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 66079694 - 66089405

NM_024439 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11417322453473224674
1422767322521773225351
2773837322828573228391
3844737323183273231921
4745527323207873232156
55311917323365273234290

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3983625Full LengthBC011091histocompatibility 47
1349285IncompleteBC096566histocompatibility 47

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077759  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024439 NP_077759 Q9BCZ4 Selenoprotein_S

Related Sequences

 
mRNAGenPeptSwissProt
BC011091 AAH11091 Q9BCZ4
AF335543 AAK07659 Q9BCZ4
AK005204 BAB23882 Q9BCZ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H47 NP_077759 R.norvegicus Sels 286900   NP_775143 98
H.sapiens SELS 55829 Gene Info NP_060915 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)