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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Smc1a, Structural maintenance of chromosomes 1A
Sequence ID:NM_019710
Entrez Gene ID:24061
Ensembl ID:ENSMUSG00000041133

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X F3|X

Chromosomal Position (from UCSC)

Chromosomal Position:X: 152016427 - 152061967

 Exon Info From UCSC:
NM_019710

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40110822Full LengthBC131667structural maintenance of chromosomes 1A
3582206IncompleteBC003279structural maintenance of chromosomes 1A
4234634IncompleteBC055477structural maintenance of chromosomes 1A
4527825IncompleteBC036973SMC (structural maintenance of chromosomes 1)-like 1 (S. cerevisiae)
5343042IncompleteBC025590structural maintenance of chromosomes 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062684  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019710 NP_062684 Q9CU62 SMC_N
SMC_hinge

Related Sequences

 
mRNAGenPeptSwissProt
AF047600 AAD27753 Q9CU62
BC003279 AAH03279 A0JLM6
BC025590 AAH25590 A0JLM6
BC055477 AAH55477 Q7TNG4
BC131667 AAI31668 Q9CU62
AK013648 BAB28937 Q9CU62
AK017948 BAB31016 Q9CU62
AK088183 BAC40193 Q9CU62
AK172908 BAD32186 Q6A0B0
AK007334 BAE43202 Q9CU62

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smc1a NP_062684 R.norvegicus Smc1a 63996   NP_113871 100
H.sapiens SMC1A 8243 Gene Info NP_006297 100
A.gambiae AgaP_AGAP002947 1273015   XP_311953 51
D.melanogaster SMC1 42853   NP_651211 50
C.elegans him-1 172116   NP_001040658 43
A.thaliana TTN8 824632   NP_001190092 38
S.pombe psm1 2540557   NP_596049 35
N.crassa NCU01323 3877569   XP_961409 35
S.cerevisiae SMC1 850540   NP_116647 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)