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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Jmjd6, jumonji domain containing 6
Sequence ID:NM_033398
Entrez Gene ID:107817
Ensembl ID:ENSMUSG00000056962

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11 75.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 116837431 - 116843375

NM_033398 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21352116698745116699076
353491116700303116700441
492627116701723116701858
628914116702382116702668
9151303116703645116704033
13041688116704378116704762

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5033487Full LengthBC056629jumonji domain containing 6
40089964IncompleteBC117737jumonji domain containing 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_203971  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_033398 NP_203971 Q9ERI5 JmjC

Related Sequences

 
mRNAGenPeptSwissProt
AF304118 AAG27719 Q9ERI5
BC056629 AAH56629 Q9ERI5
BC117737 AAI17738 A4FUU3
EF527404 ABU68574 B2WTI1
EF527405 ABU68575 B2WTI2
AK122317 BAC65599 Q9ERI5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Jmjd6 NP_203971 R.norvegicus Jmjd6 360665   NP_001012143 100
H.sapiens JMJD6 23210 Gene Info NP_001074930 98
D.melanogaster PSR 42616   NP_651026 69
A.gambiae AgaP_AGAP000158 1272104   XP_310981 67
C.elegans psr-1 177229   NP_001040940 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)