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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ocln, occludin
Sequence ID:NM_008756
Entrez Gene ID:18260
Ensembl ID:ENSMUSG00000021638

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1|13 55.9 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 100497769 - 100552609

NM_008756 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11549101267321101268869
15501591101272890101272931
15921763101276105101276276
17641979101281366101281581
19802128101284981101285129
21292290101304917101305078
22912963101309215101309887
29643080101311022101311138
30813192101322341101322452

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861700Full LengthBC138679occludin
8861701Full LengthBC138680occludin
9053929Full LengthBC145371occludin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032782  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008756 NP_032782 Q61146 MARVEL
Occludin_ELL

Related Sequences

 
mRNAGenPeptSwissProt
U49185 AAC52515 Q61146
BC138679 AAI38680 B2RS24
BC138680 AAI38681 B2RS24
BC145371 AAI45372 B2RS24
AK019880 BAB31900 Q61146
AK042576 BAC31298 Q61146
AK145798 BAE26656 Q3UKZ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ocln NP_032782 R.norvegicus Ocln 83497   NP_112619 95
H.sapiens OCLN 100506658 Gene Info NP_001192183 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)