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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Prdm1, PR domain containing 1, with ZNF domain
Sequence ID:NM_007548
Entrez Gene ID:12142
Ensembl ID:ENSMUSG00000038151

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B2|10 27.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 44446716 - 44528501

NM_007548 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
130684415698044160047
306931974416046444160592
319843034416086444161969
430445564416659744166849
455746764416992444170043
467749224417643044176675
492351434417827244178492

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069466Full LengthBC172658PR domain containing 1, with ZNF domain
40048956IncompleteBC129801PR domain containing 1, with ZNF domain

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031574  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007548 NP_031574 Q60636 zf-C2H2
SET

Related Sequences

 
mRNAGenPeptSwissProt
U08185 AAA19252 Q60636
BC129801 AAI29802 Q60636
BC172658 AAI72658  
JX154081 AFO54706 I7CPP0
AK149344 BAE28822 Q60636

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prdm1 NP_031574 R.norvegicus Prdm1 309871   NP_001101109 96
H.sapiens PRDM1 639 Gene Info NP_001189 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)