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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cpsf6, cleavage and polyadenylation specific factor 6
Sequence ID:NM_001013391
Entrez Gene ID:432508
Ensembl ID:ENSMUSG00000055531

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D2|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 117347287 - 117348800

NM_001013391 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14800116781723116786522
48014990116792990116793179
49915144116796048116796201
51455260116797495116797610
52615765116797911116798415
57665939116799069116799242
59406085116800030116800175
60866189116803136116803239
61906399116804834116805043
64006534116813894116814028

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6813785Full LengthBC068133cleavage and polyadenylation specific factor 6
5010713IncompleteBC031189cleavage and polyadenylation specific factor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001013409  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001013391 NP_001013409 Q6NVF9 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC068133 AAH68133 Q6NVF9
AK046856 BAC32898 Q6NVF9
AK048615 BAC33392 Q6NVF9
AK168764 BAE40600 Q6NVF9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cpsf6 NP_001013409 H.sapiens CPSF6 11052 Gene Info NP_008938 100
R.norvegicus Cpsf6 299811   NP_001100255 100
A.gambiae AgaP_AGAP005062 1274745   XP_313937 56
D.melanogaster CG7185 38937   NP_648206 52
C.elegans D1046.1 177710   NP_501551 41
A.thaliana AT5G55670 835661   NP_200378 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)