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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Nphp3, nephronophthisis 3 (adolescent)
Sequence ID:NM_028721
NM_172460
Entrez Gene ID:74025
Ensembl ID:ENSMUSG00000032558

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F1|9 61.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 104030006 - 104043730

 Exon Info From UCSC:
NM_028721
NM_172460

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40086844Full LengthBC115724nephronophthisis 3 (adolescent)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082997  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028721 NP_082997 Q7TNH6 TPR_1
TPR_2
NM_172460 NP_766048    

Related Sequences

 
mRNAGenPeptSwissProt
BC115724 AAI15725 Q14BM5
AY259499 AAP84621 Q7TNH6
AK014393 BAB29319 Q7TNH6
AK048877 BAC33481 Q7TNH6
AK052281 BAC34915 Q7TNH6
AK173327 BAD32605 Q7TNH6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nphp3 NP_082997 R.norvegicus Nphp3 363126   XP_343462 95
H.sapiens NPHP3 27031 Gene Info NP_694972 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)