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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lin7c, lin-7 homolog C (C. elegans)
Sequence ID:NM_011699
Entrez Gene ID:22343
Ensembl ID:ENSMUSG00000027162

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E3|2 61.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 109890877 - 109897722

NM_011699 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
144109731034109731077
45163109734621109734739
164235109735264109735335
236445109736392109736601
4464136109737402109741092

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6493071Full LengthBC046966lin-7 homolog C (C. elegans)
6832654IncompleteBC052471lin-7 homolog C (C. elegans)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035829  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011699 NP_035829 O88952 PDZ
L27

Related Sequences

 
mRNAGenPeptSwissProt
AF087695 AAC78483 O88952
AF173083 AAD48502 O88952
BC004685 AAH04685 Q99KF6
BC046966 AAH46966 O88952
AK015399 BAB29830 O88952
AK078923 BAC37462 O88952
AK135810 BAE22670 Q3UX93
AK161076 BAE36186 Q3TTY6
AK162185 BAE36776 Q3TS99

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lin7c NP_035829 H.sapiens LIN7C 55327 Gene Info NP_060832 100
R.norvegicus Lin7c 60442   NP_068623 100
A.gambiae AgaP_AGAP005858 1276526   XP_315884 82
D.melanogaster veli 43003   NP_651330 80
C.elegans lin-7 175089   NP_001122664 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)