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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. H2-Bl, histocompatibility 2, blastocyst
Sequence ID:NM_008199
Entrez Gene ID:14963
Ensembl ID:ENSMUSG00000073406

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 36080114 - 36081987

NM_008199 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11353621713336217267
1362523621794336218059
2535283621818636218461
5298043622017736220452
80510743622064036220909
107511643622110436221193

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5026047Full LengthBC058170histocompatibility 2, blastocyst

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032225  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271005 NP_001257934    
NM_008199 NP_032225 O19440 MHC_I
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
BC058170 AAH58170 Q6PEB5
BC158082 AAI58083 B2RY37
BC158084 AAI58085 B2RY37
AY533666 AAT06791 O19440
AY533667 AAT06792 Q6QMF4
Q6QMF2
AY533668 AAT06793  
AY533670 AAT06795 Q6QMF4
Q6QMF2
AY989847 AAY51862 Q4VCP2
AY989848 AAY51863 Q4VCP2
AY989850 AAY51865 Q4VCN9
AY989851 AAY51866 Q4VCN9
AY989852 AAY51867 Q4VCN9
AY989853 AAY51868 Q6PEB5
AY989854 AAY51869 Q6PEB5
AY989856 AAY51871 Q4VCN4
AY989857 AAY51872 Q4VCP2
AY989867 AAY51882 Q4VCM3
AY989838 AAZ32168 O19440
AY989839 AAZ32169  
AY989840 AAZ32170 Q4VCN4
AY989841 AAZ32171 Q4VCP2
AY989842 AAZ32172 O19440
AY989843 AAZ32173  
AY989844 AAZ32174 O19440
AY989845 AAZ32175  
AY989846 AAZ32176 Q4VCN4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-Bl NP_032225 M.musculus Gm10499 69717 Gene Info XP_003085179 86
M.musculus Gm8909 667977   NP_001074501 84
M.musculus H2-Q9 110558   XP_003085174 81
M.musculus H2-Q6 110557 Gene Info NP_997531 80
M.musculus H2-Gs10 436493   NP_001137161 80
M.musculus H2-Q1 15006 Gene Info NP_034520 79
M.musculus H2-Q2 15013 Gene Info NP_034522 78
H.sapiens HLA-B 3106 Gene Info NP_005505 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)