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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Leprot, leptin receptor overlapping transcript
Sequence ID:NM_175036
Entrez Gene ID:230514
Ensembl ID:ENSMUSG00000035212

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, synovium, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 C6|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 101647809 - 101658192

NM_175036 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
143101320387101320429
44119101325003101325078
120306101328713101328899
3071827101330442101331962

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651399Full LengthBC010289leptin receptor overlapping transcript
3583760Full LengthBC004744leptin receptor overlapping transcript

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_778201  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175036 NP_778201 O89013 Vps55

Related Sequences

 
mRNAGenPeptSwissProt
BC004744 AAH04744 O89013
BC010289 AAH10289 O89013
AK009569 BAB26366 O89013
AK088848 BAC40610 Q8BTS6
AK159489 BAE35124 O89013
AK160453 BAE35795 O89013
AK165821 BAE38395 O89013
AK168597 BAE40464 O89013
AJ011565 CAA09693 O89013

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Leprot NP_778201 R.norvegicus Leprot 56766   NP_064484 98
H.sapiens LEPROT 54741 Gene Info NP_059996 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)