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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ptcd1, pentatricopeptide repeat domain 1
Sequence ID:NM_133735
Entrez Gene ID:71799
Ensembl ID:ENSMUSG00000029624

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 145147532 - 145148284

NM_133735 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11128145908246145909373
11291311145912154145912336
13121428145912986145913102
14292133145915542145916246
21342235145919608145919709
22362454145920343145920561
24552595145921907145922047
25963068145925929145926401
30693219145927822145927972

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3156304Full LengthBC004766pentatricopeptide repeat domain 1
30459747Full LengthBC083097pentatricopeptide repeat domain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598496  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133735 NP_598496 Q8C2E4 PPR

Related Sequences

 
mRNAGenPeptSwissProt
BC004766 AAH04766 Q8C2E4
BC083097 AAH83097 Q8C2E4
AK088764 BAC40555 Q8C2E4
AK172986 BAD32264 Q6A032
AK150514 BAE29626 Q3UCI6
AK166306 BAE38694 Q3TLU8
AK171484 BAE42485 Q8C2E4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ptcd1 NP_598496 R.norvegicus Ptcd1 304278   NP_001103135 89
H.sapiens ATP5J2-PTCD1 100526740   NP_001185808 75
D.melanogaster CG4611 38601   NP_647949 35
A.gambiae AgaP_AGAP006051 1276723   XP_316101 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)