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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Fdft1, farnesyl diphosphate farnesyl transferase 1
Sequence ID:NM_010191
Entrez Gene ID:14137
Ensembl ID:ENSMUSG00000021273

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 D1|14 3.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:14: 63146404 - 63177850

NM_010191 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2118386376398763765804
183919916376998663770138
199221686377116363771339
216923606377539563775586
236124896377785463777982
249026736378213863782321
267427716378336863783465
277228826379651963796629

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5694816Full LengthBC054722farnesyl diphosphate farnesyl transferase 1
8861320Full LengthBC138301farnesyl diphosphate farnesyl transferase 1
8861321Full LengthBC138302farnesyl diphosphate farnesyl transferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034321  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_010191 NP_034321 P53798 EC 2.5.1.21 SQS_PSY

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC054722 AAH54722 P53798 EC 2.5.1.21
BC138301 AAI38302 P53798 EC 2.5.1.21
BC138302 AAI38303 P53798 EC 2.5.1.21
D29016 BAA06102 P53798 EC 2.5.1.21
AK076062 BAC36156 P53798 EC 2.5.1.21
AK146766 BAE27418 P53798 EC 2.5.1.21
AK158633 BAE34590 P53798 EC 2.5.1.21
AK162294 BAE36836 Q3TS40  
AK168629 BAE40489 P53798 EC 2.5.1.21
AK169317 BAE41072 P53798 EC 2.5.1.21

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Fdft1 NP_034321 R.norvegicus Fdft1 29580   NP_062111 93
H.sapiens FDFT1 2222 Gene Info NP_004453 89
S.cerevisiae ERG9 856597   NP_012060 47
S.pombe erg9 2541110   NP_595363 46
A.thaliana SQS2 829617   NP_195191 45
A.thaliana SQS1 829616   NP_195190 45
N.crassa NCU06054 3875964   XP_959817 43

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)