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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clvs1, clavesin 1
Sequence ID:NM_028940
Entrez Gene ID:74438
Ensembl ID:ENSMUSG00000041216

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A1|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 9271454 - 9449895

NM_028940 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
115591964639196617
15678092085349209158
78195592777939277967
956106693513329351442
1067130293568869357121
1303359893765369378831

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6848546Full LengthBC062923retinaldehyde binding protein 1-like 1
30626969IncompleteBC100556retinaldehyde binding protein 1-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083216  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028940 NP_083216 Q9D4C9 CRAL_TRIO
CRAL_TRIO_N

Related Sequences

 
mRNAGenPeptSwissProt
BC062923 AAH62923 Q9D4C9
BC100556 AAI00557 Q9D4C9
AK016622 BAB30342 Q9D4C9
AK043072 BAC31451 Q9D4C9
AK084350 BAC39166 Q9D4C9
AK136083 BAE22811 Q9D4C9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clvs1 NP_083216 R.norvegicus Clvs1 366311   NP_001102439 99
H.sapiens CLVS1 157807 Gene Info NP_775790 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)