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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Htr1a, 5-hydroxytryptamine (serotonin) receptor 1A
Sequence ID:NM_008308
Entrez Gene ID:15550
Ensembl ID:ENSMUSG00000021721

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 D1|13 58.0

Chromosomal Position (from UCSC)

Chromosomal Position:13: 105444245 - 105447776

NM_008308 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
14441106233772106238212

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861690Full LengthBC1386695-hydroxytryptamine (serotonin) receptor 1A
8861702Full LengthBC1386815-hydroxytryptamine (serotonin) receptor 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032334  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008308 NP_032334 Q64264 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
L20339 AAA16850 Q64264
U39391 AAA81519 Q64264
BC138669 AAI38670 Q64264
BC138681 AAI38682 Q64264
AK034017 BAC28548 Q8BZP1
AK043668 BAC31611 Q64264
AK049814 BAC33931 Q64264
AK049884 BAC33970 Q64264
AK140194 BAE24273 Q64264

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Htr1a NP_032334 R.norvegicus Htr1a 24473   NP_036717 94
H.sapiens HTR1A 3350 Gene Info NP_000515 88
A.gambiae GPRTYR 1273444   XP_312420 48
D.melanogaster TyrR 42452   NP_001163494 42
C.elegans ser-2 182110   NP_001024339 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)