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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Xbp1, X-box binding protein 1
Sequence ID:NM_001271730
NM_013842
Entrez Gene ID:22433
Ensembl ID:ENSMUSG00000020484

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A1|11 3.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 5520966 - 5525872

Transcript StartTranscript EndChromosomal Start Chromosomal End
123454209695421202
23533154219255422021
33246654233355423469
46761254242415424386
613180054246875425874

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2648085Full LengthBC029197X-box binding protein 1
4489182Full LengthBC016079X-box binding protein 1
3584390IncompleteBC008153X-box binding protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038870  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271730 NP_001258659    
NM_013842 NP_038870 O35426 bZIP_2

Related Sequences

 
mRNAGenPeptSwissProt
AF027963 AAB81862 O35426
BC008153 AAH08153 O35426
BC016079 AAH16079 Q05DE6
BC029197 AAH29197 O35426
AF443192 AAL60202 O35426

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Xbp1 NP_038870 R.norvegicus Xbp1 289754   NP_001004210 94
H.sapiens XBP1 7494 Gene Info NP_005071 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)