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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syngr2, synaptogyrin 2
Sequence ID:NM_009304
Entrez Gene ID:20973
Ensembl ID:ENSMUSG00000048277

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 117809680 - 117814281

NM_009304 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1137117670980117671116
138375117673772117674009
376515117674359117674498
5161524117674591117675599

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2646657Full LengthBC004829synaptogyrin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033330  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009304 NP_033330 O55101 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
AF151985 AAD38046 O55101
BC004829 AAH04829 O55101
AF364049 AAK50857 O55101
AK150234 BAE29399 O55101
AK170681 BAE41954 O55101
AJ002307 CAA05324 O55101

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syngr2 NP_033330 H.sapiens SYNGR2 9144 Gene Info NP_004701 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)