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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc38a2, solute carrier family 38, member 2
Sequence ID:NM_175121
Entrez Gene ID:67760
Ensembl ID:ENSMUSG00000022462

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 96697225 - 96699707

 Exon Info From UCSC:
NM_175121

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4038546Full LengthBC041108solute carrier family 38, member 2
6825801Full LengthBC048178solute carrier family 38, member 2
3491773IncompleteBC019690solute carrier family 38, member 2
3984227IncompleteBC049271solute carrier family 38, member 2
3984904IncompleteBC057454solute carrier family 38, member 2
4164084IncompleteBC037675solute carrier family 38, member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780330  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175121 NP_780330 Q8CFE6 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC041108 AAH41108 Q8CFE6
BC048178 AAH48178 Q8CFE6
BC049271 AAH49271 Q8CFE6
BC057454 AAH57454 Q8CFE6
AK030917 BAC27183 Q8CD96
AK031615 BAC27479 Q8CFE6
AK033812 BAC28483 Q8CFE6
AK129342 BAC98152 Q8CFE6
AK169378 BAE41125 Q8CFE6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc38a2 NP_780330 R.norvegicus Slc38a2 29642   NP_851604 96
H.sapiens SLC38A2 54407 Gene Info NP_061849 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)