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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. H2-Q1, histocompatibility 2, Q region locus 1
Sequence ID:NM_010390
Entrez Gene ID:15006
Ensembl ID:ENSMUSG00000079507

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 19.14 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35320404 - 35325099

NM_010390 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1683545750235457569
693383545776535458034
3396143545821935458494
6158903546000835460283
89110253546041135460545
102610583546072435460756
105911063546094535460992
110720243546112635462043

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6398887Full LengthBC080812histocompatibility 2, Q region locus 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034520  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010390 NP_034520 Q31215 MHC_I
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
U96752 AAB71648 O19441
BC080812 AAH80812 Q66JR0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-Q1 NP_034520 M.musculus H2-Q9 110558   XP_003085174 81
M.musculus H2-Gs10 436493   NP_001137161 81
M.musculus H2-Bl 14963 Gene Info NP_032225 79
M.musculus H2-Q2 15013 Gene Info NP_034522 79
M.musculus H2-Q6 110557 Gene Info NP_997531 78
M.musculus Gm8909 667977   NP_001074501 78
M.musculus Gm10499 69717 Gene Info XP_003085179 76
H.sapiens HLA-B 3106 Gene Info NP_005505 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)