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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cxcl5, chemokine (C-X-C motif) ligand 5
Sequence ID:NM_009141
Entrez Gene ID:20311
Ensembl ID:ENSMUSG00000029371

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E1|5 53.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 90759385 - 90761625

NM_009141 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12629118832491188585
2633989118871491188849
3994829118899291189075
48316559118947891190650

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4976854Full LengthBC024392chemokine (C-X-C motif) ligand 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033167  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009141 NP_033167 P50228
Q790R4
IL8

Related Sequences

 
mRNAGenPeptSwissProt
U27267 AAC52238 P50228
Q790R4
BC024392 AAH24392 P50228
Q790R4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cxcl5 NP_033167 R.norvegicus Cxcl5 60665   NP_071550 78
H.sapiens CXCL6 6372 Gene Info NP_002984 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)