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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Ift88, intraflagellar transport 88
Sequence ID:NM_009376
Entrez Gene ID:21821
Ensembl ID:ENSMUSG00000040040

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:14 C3|14 21.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:14: 57424076 - 57517883

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4019334Full LengthBC012250intraflagellar transport 88 homolog (Chlamydomonas)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033402  

Protein Infomation

NM_009376 NP_033402 Q61371 TPR_1

Related Sequences

L31959 AAB59705 Q61371
BC012250 AAH12250 Q61371
AK135110 BAE22424 Q61371
AK160633 BAE35929 Q3TUP2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Ift88 NP_033402 R.norvegicus Ift88 305918   NP_001100736 97
H.sapiens IFT88 8100 Gene Info NP_783195 89
C.elegans osm-5 180585   NP_508511 49
A.gambiae AgaP_AGAP006324 1276940   XP_556988 43
D.melanogaster nompB 35414   NP_724347 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)