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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Six1, sine oculis-related homeobox 1
Sequence ID:NM_009189
Entrez Gene ID:20471
Ensembl ID:ENSMUSG00000051367

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12 C3|12 31.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:12: 73041829 - 73046464

NM_009189 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
120037414281374144815
200428497414685374147698

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4188451Full LengthBC023304sine oculis-related homeobox 1 homolog (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033215  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009189 NP_033215 Q8BSP4 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
BC023304 AAH23304 Q62231
Q3V2C3
AK031122 BAC27265 Q8BSP4
AK131925 BAE20875 Q62231
Q3V2C3
X80339 CAA56585 Q62231

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Six1 NP_033215 R.norvegicus Six1 114634   NP_446211 100
H.sapiens SIX1 6495 Gene Info NP_005973 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)