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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Gkn1, gastrokine 1
Sequence ID:NM_025466
Entrez Gene ID:66283
Ensembl ID:ENSMUSG00000030050

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6|6 D2

Chromosomal Position (from UCSC)

Chromosomal Position:6: 87345652 - 87350915

NM_025466 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17208729564687296365
7218628729706187297202
8639738729810487298214
97411148729899687299136
111511658729922787299277
116612208730085487300908

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30521253Full LengthBC099446gastrokine 1
40130817Full LengthBC132540gastrokine 1
40130819Full LengthBC132542gastrokine 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079742  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025466 NP_079742 Q9CR36
Q53YU8
BRICHOS

Related Sequences

 
mRNAGenPeptSwissProt
BC099446 AAH99446 Q9CR36
Q53YU8
BC132540 AAI32541 Q53YU8
BC132542 AAI32543 Q53YU8
AY456960 AAR21210 Q9CR36
Q53YU8
AK008622 BAB25784 Q9CR36
Q53YU8
AK008641 BAB25801 Q9CR36
Q53YU8
AK008647 BAB25805 Q9CR36
Q53YU8
AK008722 BAB25856 Q9CR36
Q53YU8
AK008745 BAB25872 Q9CR36
Q53YU8
AK008933 BAB25975 Q9CR36
Q53YU8
AK008990 BAB26010 Q9CR36
Q53YU8
AK009145 BAB26103 Q9CR36
AK019050 BAB31525 Q9CR36
AK028136 BAE20436 Q9CR36
Q53YU8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Gkn1 NP_079742 R.norvegicus Gkn1 297418   NP_945323 90
H.sapiens GKN1 56287 Gene Info NP_062563 65

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)