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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vps53, vacuolar protein sorting 53 (yeast)
Sequence ID:NM_026664
Entrez Gene ID:68299
Ensembl ID:ENSMUSG00000017288

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11|11 B4

Chromosomal Position (from UCSC)

Chromosomal Position:11: 76170509 - 76179612

 Exon Info From UCSC:
NM_026664

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3964008Full LengthBC034371vacuolar protein sorting 53 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080940  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026664 NP_080940 Q8CCB4 Vps53_N

Related Sequences

 
mRNAGenPeptSwissProt
BC034371 AAH34371 Q8CCB4
AK009970 BAB26620 Q8CCB4
AK019408 BAB31707 Q8CCB4
AK033495 BAC28318 Q8CCB4
AK049259 BAC33641 Q8CCB4
AK149966 BAE29200 Q3UDN2
AK150001 BAE29229 Q3UDN2
AK159454 BAE35097 Q3TX19
AK166234 BAE38649 Q3TLZ3
AK167310 BAE39414 Q3TJT1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vps53 NP_080940 R.norvegicus Vps53 287535   NP_001099283 99
H.sapiens VPS53 55275 Gene Info NP_001121631 97
A.gambiae AgaP_AGAP006623 1277209   XP_316653 54
D.melanogaster CG3338 33640   NP_608825 53
C.elegans T05G5.8 176377   NP_499157 42
A.thaliana AT1G50970 841519   NP_175510 36
A.thaliana HIT1 841472   NP_564573 36
N.crassa NCU03024 3881560   XP_965410 34
S.pombe vps53 2542930   NP_593341 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)