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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sp1, Trans-acting transcription factor 1
Sequence ID:NM_013672
Entrez Gene ID:20683
Ensembl ID:ENSMUSG00000001280

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 F3|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 102406379 - 102432387

NM_013672 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1107102236746102236852
108268102238202102238362
2691772102238646102240149
17731938102256061102256226
19392138102260387102260586
21397818102261155102266834

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100066298Full LengthBC165998trans-acting transcription factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038700  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013672 NP_038700   zf-C2H2

Related Sequences

 
mRNAGenPeptSwissProt
S79832 AAB35321 O89090
AF022363 AAC08527 O89090
AF062566 AAC16484 O89090
BC165998 AAI65998  
EF200005 ABM98419 A2TH11

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sp1 NP_038700 R.norvegicus Sp1 24790   NP_036787 99
H.sapiens SP1 6667 Gene Info NP_612482 96
A.gambiae AgaP_AGAP004438 1274581   XP_313726 36
D.melanogaster CG5669 42882   NP_651232 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta