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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cst13, cystatin 13
Sequence ID:NM_027024
Entrez Gene ID:69294
Ensembl ID:ENSMUSG00000036924

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 G3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 148820121 - 148830410

NM_027024 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1134148645834148645967
135489148648695148649049
490603148653875148653988
604765148655984148656145

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6774445Full LengthBC048681cystatin 13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_081300  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027024 NP_081300 Q80ZN5 Cystatin

Related Sequences

 
mRNAGenPeptSwissProt
BC048681 AAH48681 Q80ZN5
AY600990 AAT11922 Q80ZN5
AK005665 BAB24175 Q80ZN5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cst13 NP_081300 R.norvegicus Cst13 502679   NP_001102813 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)