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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. H2-DMb1, histocompatibility 2, class II, locus Mb1
Sequence ID:NM_010387
Entrez Gene ID:14999
Ensembl ID:ENSMUSG00000079547

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.58 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34153190 - 34160229

NM_010387 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
22643429013534290397
2655463429237734292658
5478313429419034294474
8329483429628834296404
9499843429657334296608
98512853429687334297173

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3486844Full LengthBC003718histocompatibility 2, class II, locus Mb1
3491702Full LengthBC002237histocompatibility 2, class II, locus Mb1
30072718IncompleteBC052864histocompatibility 2, class II, locus Mb1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034517  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010387 NP_034517 Q31094 MHC_II_beta
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
U20309 AAA86485 Q7JFR1
U20310 AAA86486 Q31095
U20312 AAA86488 Q31097
U35329 AAA91139 Q31606
U35330 AAA91140 Q31606
U35331 AAA91141 Q31109
U35332 AAA91142 Q31110
U35333 AAA91143 Q31111
BC002237 AAH02237 Q9BCZ2
BC003718 AAH03718 Q31094
AK032745 BAC28006 Q31094
AK169969 BAE41488 Q3TDW0
AK170866 BAE42080 Q3TC77
X62743 CAA44605 P35737
X90964 CAA62452 Q31622
X90965 CAA62453 Q31631
X90966 CAA62454 Q31630
X90967 CAA62455 Q31630
X90968 CAA62456 Q31128
X90969 CAA62457 Q31622
X90970 CAA62458 Q31630
X90971 CAA62459 Q31622
X90972 CAA62460 Q31631
X90973 CAA62461 Q31630
X90974 CAA62462 Q31630
X90975 CAA62463 Q31630

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-DMb1 NP_034517 M.musculus H2-DMb2 15000 Gene Info NP_034518 93
R.norvegicus RT1-DMb 294273   NP_942035 85
H.sapiens HLA-DMB 3109 Gene Info NP_002109 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)