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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Shroom3, shroom family member 3
Sequence ID:NM_001077595
NM_001077596
NM_015756
Entrez Gene ID:27428
Ensembl ID:ENSMUSG00000029381

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 E3|5 52.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 92683434 - 92964951

 Exon Info From UCSC:
NM_001077595
NM_001077596
NM_015756

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9053661Full LengthBC145113shroom family member 3
3484373IncompleteBC003909shroom family member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056571  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001077595 NP_001071063    
NM_001077596 NP_001071064    
NM_015756 NP_056571 Q9QXN0 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF199421 AAF13269 Q9QXN0
AF199422 AAF13270 Q9QXN0
BC003909 AAH03909 Q9QXN0
BC145113 AAI45114 B7ZNA0
AK129371 BAC98181 Q9QXN0
AK147493 BAE27948 Q9QXN0
AK164918 BAE37966 Q9QXN0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Shroom3 NP_056571 R.norvegicus Shroom3 305230   NP_001094359 88
H.sapiens SHROOM3 57619 Gene Info NP_065910 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)