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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ccl19, chemokine (C-C motif) ligand 19
Sequence ID:NM_011888
Entrez Gene ID:24047
Ensembl ID:ENSMUSG00000071005

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A5|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 42754524 - 42756518

NM_011888 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12494224850342248751
2503824224972142249853
3834764225007142250164
4777204225025342250496

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1349213Full LengthBC051472chemokine (C-C motif) ligand 19
4920139IncompleteBC025130chemokine (C-C motif) ligand 19

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036018  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011888 NP_036018 Q548P0
O70460
IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF059208 AAC14661 Q548P0
O70460
BC025130 AAH25130 Q8R170
BC051472 AAH51472 Q548P0
O70460
AK144337 BAE25839 Q548P0
O70460

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccl19 NP_036018 M.musculus Gm2023 100039053 Gene Info XP_001472218 100
M.musculus Gm2457 100039848 Gene Info XP_001473709 100
M.musculus Gm2564 100040035 Gene Info XP_001474036 100
M.musculus Gm12407 100039789   XP_001473558 99
M.musculus LOC100043918 100043918   XP_001481287 98
M.musculus Gm2442 100039824 Gene Info XP_001473661 98
M.musculus Gm13309 100039973 Gene Info XP_001473928 98
M.musculus LOC100043921 100043921   XP_001481290 97
R.norvegicus Ccl19 362506   NP_001102131 89
H.sapiens CCL19 6363 Gene Info NP_006265 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)