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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccl21a, chemokine (C-C motif) ligand 21A (serine)
Sequence ID:NM_011124
Entrez Gene ID:18829
Ensembl ID:ENSMUSG00000094686

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A5|4 13.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 42773145 - 42773977

NM_011124 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11404223104442231183
1412614223127242231392
2624444223148742231669
4458684223175242232175

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1196234Full LengthBC028747chemokine (C-C motif) ligand 21A
3372243Full LengthBC038120chemokine (C-C motif) ligand 21A
4208773Full LengthBC025974chemokine (C-C motif) ligand 21A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035254  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001193667 NP_001180596    
NM_011124 NP_035254 P84444 IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF006637 AAB61440 P84444
AF001980 AAB86595 P84444
BC025974 AAH25974 P84444
BC028747 AAH28747 P84444
BC038120 AAH38120 P84444
AK144258 BAE25802 P84444
AK155924 BAE33505 P84444

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccl21a NP_035254 M.musculus Gm1987 100504362 Gene Info XP_003085475 100
M.musculus LOC100041504 100041504   XP_001473308 99
M.musculus Ccl21b 100042493   NP_035465 99
M.musculus Ccl21c 65956   NP_075539 99
M.musculus Gm13304 100504346   XP_003085593 99
M.musculus Gm10591 100504239   XP_003085470 99
M.musculus LOC100041593 100041593   XP_001473444 99
R.norvegicus Ccl21 298006   NP_001008513 87
H.sapiens CCL21 6366 Gene Info NP_002980 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)