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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccl21a, chemokine (C-C motif) ligand 21A (serine)
Sequence ID:NM_011124
Entrez Gene ID:18829
Ensembl ID:ENSMUSG00000094686

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 A5|4 13.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 42773145 - 42773977

NM_011124 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1196234Full LengthBC028747chemokine (C-C motif) ligand 21A
3372243Full LengthBC038120chemokine (C-C motif) ligand 21A
4208773Full LengthBC025974chemokine (C-C motif) ligand 21A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035254  

Protein Infomation

NM_001193667 NP_001180596    
NM_011124 NP_035254 P84444 IL8

Related Sequences

AF006637 AAB61440 P84444
AF001980 AAB86595 P84444
BC025974 AAH25974 P84444
BC028747 AAH28747 P84444
BC038120 AAH38120 P84444
AK144258 BAE25802 P84444
AK155924 BAE33505 P84444

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Ccl21a NP_035254 M.musculus Gm1987 100504362 Gene Info XP_003085475 100
M.musculus LOC100041504 100041504   XP_001473308 99
M.musculus Ccl21b 100042493   NP_035465 99
M.musculus Ccl21c 65956   NP_075539 99
M.musculus Gm13304 100504346   XP_003085593 99
M.musculus Gm10591 100504239   XP_003085470 99
M.musculus LOC100041593 100041593   XP_001473444 99
R.norvegicus Ccl21 298006   NP_001008513 87
H.sapiens CCL21 6366 Gene Info NP_002980 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)