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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col1a1, collagen, type I, alpha 1
Sequence ID:NM_007742
Entrez Gene ID:12842
Ensembl ID:ENSMUSG00000001506

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11 56.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 94951639 - 94953040

 Exon Info From UCSC:
NM_007742

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3992363Full LengthBC059281collagen, type I, alpha 1
4225038Full LengthBC050014collagen, type I, alpha 1
3586143IncompleteBC003198collagen, type I, alpha 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007742 NP_031768 P11087 VWC
Collagen
COLFI

Related Sequences

 
mRNAGenPeptSwissProt
U03419 AAA03475 Q60785
M14423 AAA37333 P11087
U08020 AAA88912 P11087
BC003198 AAH03198 Q99LL6
BC050014 AAH50014 P11087
BC059281 AAH59281 P11087

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col1a1 NP_031768 R.norvegicus Col1a1 29393   NP_445756 98
H.sapiens COL1A1 1277 Gene Info NP_000079 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)