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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rap1a, RAS-related protein-1a
Sequence ID:NM_145541
Entrez Gene ID:109905
Ensembl ID:ENSMUSG00000068798

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 F2.2|3 48.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 105727266 - 105801330

NM_145541 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
33715105531199105531881
716831105534873105534988
832975105540672105540815
9761116105542431105542571
11171173105544263105544319
11741242105548821105548889
12431326105553162105553245
13271424105604156105604253

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3494423Full LengthBC051419RAS-related protein-1a
6438722Full LengthBC083128RAS-related protein-1a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663516  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145541 NP_663516 P62835 Ras

Related Sequences

 
mRNAGenPeptSwissProt
BC051419 AAH51419 P62835
BC083128 AAH83128 P62835
AK030897 BAE20461 Q3V3W9
AK152504 BAE31271 Q3U7U8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rap1a NP_663516 H.sapiens RAP1A 5906 Gene Info NP_001010935 100
R.norvegicus Rap1a 295347   NP_001005765 100
C.elegans rap-1 177709   NP_501549 90
A.gambiae AgaP_AGAP001874 1281247   XP_550942 87
D.melanogaster R 38244   NP_001189023 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta