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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Capn3, calpain 3
Sequence ID:NM_001109761
NM_001177799
NM_007601
Entrez Gene ID:12335
Ensembl ID:ENSMUSG00000079110

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E5|2 67.2 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 120476944 - 120504666

 Exon Info From UCSC:
NM_001109761
NM_001177799
NM_007601

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30681055Full LengthBC090661calpain 3
40047690Full LengthBC139790calpain 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031627  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001109761 NP_001103231      
NM_001177799 NP_001171270      
NM_007601 NP_031627 Q64691 EC 3.4.22.54 efhand
Peptidase_C2
Calpain_III

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF091998 AAC61764 O88977  
AF127766 AAD28255 Q64691 EC 3.4.22.54
BC090661 AAH90661 Q0VGP9  
BC107011 AAI07012 Q08EM5  
BC139790 AAI39791 A4QPE6  
AK049994 BAC34021 Q8C7L1  
AK079673 BAC37720 Q8C532  
AK088613 BAC40452 Q8C2H4  
X92523 CAA63301 Q64691 EC 3.4.22.54

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Capn3 NP_031627 R.norvegicus Capn3 29155   NP_058813 99
H.sapiens CAPN3 825 Gene Info NP_000061 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)