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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Csda, cold shock domain protein A
Sequence ID:NM_011733
NM_139117
Entrez Gene ID:56449
Ensembl ID:ENSMUSG00000030189

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 131364883 - 131388292

 Exon Info From UCSC:
NM_011733
NM_139117

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5345031Full LengthBC027785cold shock domain protein A
6493766Full LengthBC048242cold shock domain protein A
6530404Full LengthBC062377cold shock domain protein A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620817  NP_035863  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011733 NP_035863   CSD
NM_139117 NP_620817 Q9JKB3 CSD

Related Sequences

 
mRNAGenPeptSwissProt
AF246224 AAF61741 Q9JKB3
AF248546 AAG14418 Q9JKB3
AF248547 AAG14419 Q9JKB3
BC027785 AAH27785 Q68G78
BC048242 AAH48242 Q9JKB3
BC062377 AAH62377 Q9JKB3
D14485 BAA03376 Q61478
AK076041 BAC36141 Q8BPG0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Csda NP_620817 R.norvegicus Csda 83807   NP_114185 100
H.sapiens CSDA 8531 Gene Info NP_003642 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)