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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clca1, chloride channel calcium activated 1
Sequence ID:NM_009899
Entrez Gene ID:12722
Ensembl ID:ENSMUSG00000056025

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3 H2-H3|3 72.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:3: 144730315 - 144760739

 Exon Info From UCSC:
NM_009899

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3710379Full LengthBC010260chloride channel calcium activated 1
9053605Full LengthBC145057chloride channel calcium activated 1
40130619Full LengthBC132342chloride channel calcium activated 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034029  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009899 NP_034029 Q9QX15 VWA
CLCA_N

Related Sequences

 
mRNAGenPeptSwissProt
AF052746 AAC35003 O88860
AF047838 AAC79982 Q9QX15
BC010260 AAH10260 Q91Z28
BC132342 AAI32343 Q9QX15
BC145057 AAI45058 B7ZN73
AK032511 BAC27903 Q8CCM1
AK087213 BAC39823 Q8C324
AK142211 BAE24978 Q3UQR1
AK161805 BAE36582 Q9QX15

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clca1 NP_034029 M.musculus Clca2 80797 Gene Info NP_085104 95
R.norvegicus Clca2 362052   NP_001013220 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)