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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rnf139, ring finger protein 139
Sequence ID:NM_175226
Entrez Gene ID:75841
Ensembl ID:ENSMUSG00000037075

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 D1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 58889287 - 58900302

NM_175226 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12665872078358721048
26743485872986358733944

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30070643Full LengthBC052901ring finger protein 139

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780435  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175226 NP_780435   zf-C3HC4

Related Sequences

 
mRNAGenPeptSwissProt
BC052901 AAH52901 Q7TMV1
AK033506 BAC28327 Q7TMV1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rnf139 NP_780435 R.norvegicus Rnf139 315000   NP_001121017 98
H.sapiens RNF139 11236 Gene Info NP_009149 94
D.melanogaster Trc8 43476   NP_733292 46
A.gambiae AgaP_AGAP003666 1274343   XP_313450 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)