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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cpsf1, cleavage and polyadenylation specific factor 1
Sequence ID:NM_053193
NM_001164173
Entrez Gene ID:94230
Ensembl ID:ENSMUSG00000034022

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 D3|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 76595807 - 76607554

 Exon Info From UCSC:
NM_053193
NM_001164173

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6854851Full LengthBC056388cleavage and polyadenylation specific factor 1
5345905IncompleteBC057945cleavage and polyadenylation specific factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444423  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001164173 NP_001157645    
NM_053193 NP_444423 Q9EPU4 CPSF_A

Related Sequences

 
mRNAGenPeptSwissProt
AF322193 AAG40326 Q9EPU4
BC056388 AAH56388 Q9EPU4
AK155648 BAE33365 Q3U1X8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cpsf1 NP_444423 R.norvegicus Cpsf1 366952   NP_001124043 99
H.sapiens CPSF1 29894 Gene Info NP_037423 97
A.gambiae AgaP_AGAP011340 1270599   XP_309311 51
D.melanogaster Cpsf160 44250   NP_995833 47
A.thaliana CPSF160 835240   NP_199979 35
C.elegans cpsf-1 177003   NP_500157 35
N.crassa NCU02082 3880749   XP_964609 31
S.pombe cft1 2539694   NP_595441 28
S.cerevisiae CFT1 851895   NP_010587 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta