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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pqlc2, PQ loop repeat containing 2
Sequence ID:NM_145384
Entrez Gene ID:212555
Ensembl ID:ENSMUSG00000028744

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 139294029 - 139310685

NM_145384 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1965138853919138854883
9661151138856140138856325
11521244138856926138857018
12451387138857164138857306
13881475138857704138857791
14761605138858339138858468
16061853138862357138862604
18541975138863643138863764
19762047138866543138866614

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5065163Full LengthBC019216PQ loop repeat containing 2
5309871Full LengthBC025609PQ loop repeat containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663359  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145384 NP_663359 Q8VCS7
Q8C4N4
PQ-loop

Related Sequences

 
mRNAGenPeptSwissProt
BC019216 AAH19216 Q8VCS7
BC025609 AAH25609 Q8C4N4
AK081661 BAC38282 Q8C4N4
AK156668 BAE33801 Q8C4N4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pqlc2 NP_663359 H.sapiens PQLC2 54896 Gene Info NP_001035214 86
N.crassa NCU00300 3873941   XP_957771 42
C.elegans Y43H11AL.2 3565323   NP_493686 37
S.cerevisiae YOL092W 854061   NP_014549 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)