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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Trpv1, transient receptor potential cation channel, subfamily V, member 1
Sequence ID:NM_001001445
Entrez Gene ID:193034
Ensembl ID:ENSMUSG00000005952

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 44.1 cM|11 B3

Chromosomal Position (from UCSC)

Chromosomal Position:11: 73238258 - 73260507

 Exon Info From UCSC:
NM_001001445

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016604Full LengthBC153199transient receptor potential cation channel, subfamily V, member 1
100015631BC148644transient receptor potential cation channel, subfamily V, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001445  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001445 NP_001001445 Q704Y3 Ank
Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC148644 AAI48645  
BC153199 AAI53200  
AY445519 AAS01605 Q704Y3
AY452083 AAS15574 Q704Y3
AY452084 AAS15575 Q704Y3
AB180097 BAD20301 Q704Y3
AK051315 BAE20689 Q3V318
AJ620495 CAF05661 Q704Y3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trpv1 NP_001001445 R.norvegicus Trpv1 83810   NP_114188 95
H.sapiens TRPV1 7442 Gene Info NP_542435 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)