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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col10a1, collagen, type X, alpha 1
Sequence ID:NM_009925
Entrez Gene ID:12813
Ensembl ID:ENSMUSG00000039462

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B1-B3|10 22.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 34395185 - 34395916

NM_009925 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1633410978634109848
642323411041234110580
23331303411399334116890

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063614Full LengthBC156930collagen, type X, alpha 1
100061538BC156192collagen, type X, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034055  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009925 NP_034055 Q05306 C1q
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC156192 AAI56193  
BC156930 AAI56931  
X63013 CAA44741 Q05306

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col10a1 NP_034055 R.norvegicus Col10a1 25681   XP_001053056 93
H.sapiens COL10A1 1300 Gene Info NP_000484 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)