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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc25a39, Solute carrier family 25, member 39
Sequence ID:NM_026542
Entrez Gene ID:68066
Ensembl ID:ENSMUSG00000018677

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11 60.0

Chromosomal Position (from UCSC)

Chromosomal Position:11: 102403144 - 102407476

 Exon Info From UCSC:
NM_026542

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40103267Full LengthBC115661solute carrier family 25, member 39
40103268Full LengthBC115662solute carrier family 25, member 39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080818  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026542 NP_080818 Q9D8K8 Mito_carr

Related Sequences

 
mRNAGenPeptSwissProt
BC115661 AAI15662 Q14BQ5
BC115662 AAI15663 Q14BQ5
Q9D8K8
AK007934 BAB25360 Q9D8K8
AK078417 BAC37264 Q9D8K8
AK161289 BAE36297 Q9D8K8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc25a39 NP_080818 R.norvegicus Slc25a39 360636   NP_001019963 96
H.sapiens SLC25A39 51629 Gene Info NP_001137252 89
D.melanogaster CG2616 40915   NP_649731 51
A.thaliana MTM1 828907   NP_567790 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)